Include RPBS items
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GPG Key ID:
7234E476BF21C61A
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@ -71,6 +71,10 @@ for mp_code in sorted(brand_names.keys()):
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# Conflict
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continue
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# Exceptions
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if short_name == 'Coloxyl with':
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continue
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# Can shorten
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if brand_name in brand_names[mp_code]:
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brand_names[mp_code].remove(brand_name)
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@ -170,7 +170,10 @@
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td = document.createElement('td'); td.innerText = item['maximum_prescribable_units']; tr.appendChild(td);
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td = document.createElement('td'); td.innerText = item['number_repeats']; tr.appendChild(td);
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if (item['benefit_type'] === 'unrestricted') {
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if (item['program'] === 'R1') {
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td = document.createElement('td'); td.innerHTML = '<a href="https://www.pbs.gov.au/medicine/item/' + item['code'] + '" target="_blank">RPBS</a>'; tr.appendChild(td);
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tr.classList.add('table-secondary');
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} else if (item['benefit_type'] === 'unrestricted') {
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td = document.createElement('td'); tr.appendChild(td);
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} else if (item['benefit_type'] === 'restricted') {
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td = document.createElement('td'); td.innerHTML = '<a href="https://www.pbs.gov.au/medicine/item/' + item['code'] + '" target="_blank">Restricted</a>'; tr.appendChild(td);
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@ -193,6 +196,14 @@
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const regexIsNumber = /^[0-9]+$/.compile();
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function comparePBSItems(item1, item2) {
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// Sort RPBS, etc. benefits after other items
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if (item1['program'] === 'GE' && item2['program'] !== 'GE') {
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return -1;
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}
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if (item2['program'] === 'GE' && item1['program'] !== 'GE') {
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return 1;
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}
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// Sort tablets/capsules before other forms
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if ((item1['mpp_preferred_term'].indexOf(' tablet, ') >= 0 || item1['mpp_preferred_term'].indexOf(' capsule, ') >= 0) && !(item2['mpp_preferred_term'].indexOf(' tablet, ') >= 0 || item2['mpp_preferred_term'].indexOf(' capsule, ') >= 0)) {
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@ -24,7 +24,7 @@ cur = con.cursor()
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# Init schema
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cur.execute('DROP TABLE IF EXISTS pbs_item')
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cur.execute('CREATE TABLE pbs_item (code TEXT PRIMARY KEY, mpp_code TEXT, maximum_prescribable_units INTEGER, number_repeats INTEGER, benefit_type TEXT)')
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cur.execute('CREATE TABLE pbs_item (code TEXT PRIMARY KEY, mpp_code TEXT, maximum_prescribable_units INTEGER, number_repeats INTEGER, benefit_type TEXT, program TEXT)')
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cur.execute('DROP TABLE IF EXISTS pbs_mpp')
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cur.execute('CREATE TABLE pbs_mpp (code TEXT PRIMARY KEY, mp_code TEXT, preferred_term TEXT)')
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@ -60,8 +60,8 @@ print('Parsed XML')
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root = tree.getroot()
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ns = {'pbs': 'http://schema.pbs.gov.au/', 'xlink': 'http://www.w3.org/1999/xlink', 'xml': 'http://www.w3.org/XML/1998/namespace', 'rdf': 'http://www.w3.org/1999/02/22-rdf-syntax-ns#', 'dbk': 'http://docbook.org/ns/docbook'}
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# Get General Schedule
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program = next(p for p in root.find('pbs:schedule', ns).findall('pbs:program', ns) if p.find('pbs:info', ns).find('pbs:code', ns).text == 'GE')
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# -----------------------------------------
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# Parse items from each desired PBS program
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mpps_to_parse = set()
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tpps_to_parse = set()
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@ -69,46 +69,56 @@ mps_to_parse = set()
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restrictions_to_parse = set()
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criteria_to_parse = set()
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# Get schedule items (prescribing-rule) in schedule
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for item in program.findall('pbs:prescribing-rule', ns):
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code = item.find('pbs:code', ns).text
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def parse_program(program_code):
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# Get program
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program = next(p for p in root.find('pbs:schedule', ns).findall('pbs:program', ns) if p.find('pbs:info', ns).find('pbs:code', ns).text == program_code)
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# Only get benefits available to medical practitioners
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benefits = [b for b in item.find('pbs:benefit-types-list', ns).findall('pbs:benefit-type', ns) if b.find('pbs:member-of-list', ns).find('pbs:member-of[@rdf:resource="http://pbs.gov.au/prescriber/medical"]', ns)]
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if not benefits:
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continue
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assert len(benefits) == 1
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benefit = benefits[0]
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mpp_id = item.find('pbs:ready-prepared', ns).find('pbs:mpp-reference', ns).get('{http://www.w3.org/1999/xlink}href').lstrip('#')
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mpp_code = item.find('pbs:ready-prepared', ns).find('pbs:mpp-reference', ns).find('pbs:code', ns).text
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max_units = item.find('pbs:ready-prepared', ns).find('pbs:maximum-prescribable[@rdf:resource="http://pbs.gov.au/reference/unit-of-use"]', ns).find('pbs:value', ns).text
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max_repeats = item.find('pbs:ready-prepared', ns).find('pbs:number-repeats', ns).find('pbs:value', ns).text
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benefit_type = {
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'http://pbs.gov.au/benefit-type/unrestricted': 'unrestricted',
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'http://pbs.gov.au/benefit-type/restricted': 'restricted',
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'http://pbs.gov.au/benefit-type/streamlined': 'streamlined',
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'http://pbs.gov.au/benefit-type/authority-required': 'authority',
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}[benefit.get('{http://www.w3.org/1999/02/22-rdf-syntax-ns#}resource')]
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cur.execute('INSERT INTO pbs_item (code, mpp_code, maximum_prescribable_units, number_repeats, benefit_type) VALUES (?, ?, ?, ?, ?)', (code, mpp_code, max_units, max_repeats, benefit_type))
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# Get restrictions
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if restrictions := benefit.find('pbs:restriction-references-list', ns):
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for restriction_reference in restrictions.findall('pbs:restriction-reference', ns):
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restriction_id = restriction_reference.get('{http://www.w3.org/1999/xlink}href').lstrip('#')
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restriction_code = restriction_reference.find('pbs:code', ns).text
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cur.execute('INSERT INTO pbs_item_restriction (item_code, restriction_code) VALUES (?, ?)', (code, restriction_code))
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# Queue this restriction for parsing
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restrictions_to_parse.add(restriction_id)
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# Queue the MPP for parsing
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mpps_to_parse.add(mpp_id)
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# Get schedule items (prescribing-rule) in schedule
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for item in program.findall('pbs:prescribing-rule', ns):
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code = item.find('pbs:code', ns).text
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# Only get benefits available to medical practitioners
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benefits = [b for b in item.find('pbs:benefit-types-list', ns).findall('pbs:benefit-type', ns) if b.find('pbs:member-of-list', ns).find('pbs:member-of[@rdf:resource="http://pbs.gov.au/prescriber/medical"]', ns)]
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if not benefits:
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continue
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assert len(benefits) == 1
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benefit = benefits[0]
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mpp_id = item.find('pbs:ready-prepared', ns).find('pbs:mpp-reference', ns).get('{http://www.w3.org/1999/xlink}href').lstrip('#')
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mpp_code = item.find('pbs:ready-prepared', ns).find('pbs:mpp-reference', ns).find('pbs:code', ns).text
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max_units = item.find('pbs:ready-prepared', ns).find('pbs:maximum-prescribable[@rdf:resource="http://pbs.gov.au/reference/unit-of-use"]', ns).find('pbs:value', ns).text
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max_repeats = item.find('pbs:ready-prepared', ns).find('pbs:number-repeats', ns).find('pbs:value', ns).text
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benefit_type = {
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'http://pbs.gov.au/benefit-type/unrestricted': 'unrestricted',
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'http://pbs.gov.au/benefit-type/restricted': 'restricted',
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'http://pbs.gov.au/benefit-type/streamlined': 'streamlined',
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'http://pbs.gov.au/benefit-type/authority-required': 'authority',
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}[benefit.get('{http://www.w3.org/1999/02/22-rdf-syntax-ns#}resource')]
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cur.execute('INSERT INTO pbs_item (code, mpp_code, maximum_prescribable_units, number_repeats, benefit_type, program) VALUES (?, ?, ?, ?, ?, ?)', (code, mpp_code, max_units, max_repeats, benefit_type, program_code))
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# Get restrictions
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if restrictions := benefit.find('pbs:restriction-references-list', ns):
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for restriction_reference in restrictions.findall('pbs:restriction-reference', ns):
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restriction_id = restriction_reference.get('{http://www.w3.org/1999/xlink}href').lstrip('#')
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restriction_code = restriction_reference.find('pbs:code', ns).text
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cur.execute('INSERT INTO pbs_item_restriction (item_code, restriction_code) VALUES (?, ?)', (code, restriction_code))
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# Queue this restriction for parsing
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restrictions_to_parse.add(restriction_id)
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# Queue the MPP for parsing
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mpps_to_parse.add(mpp_id)
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parse_program('GE') # General Schedule
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parse_program('R1') # Repatriation PBS
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# ----------------
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# Parse MPPs, etc.
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# Parse MPPs
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for mpp_id in sorted(list(mpps_to_parse)):
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@ -171,10 +181,15 @@ for restriction_id in sorted(list(restrictions_to_parse)):
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severity_term = severity.find('pbs:preferred-term', ns).text.strip()
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indication_strings.append(severity_term)
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condition_id = indication.find('pbs:condition-reference', ns).get('{http://www.w3.org/1999/xlink}href').lstrip('#')
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condition = root.find('pbs:prescribing-texts-list', ns).find('pbs:condition[@xml:id="' + condition_id + '"]', ns)
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condition_term = condition.find('pbs:preferred-term', ns).text.strip()
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indication_strings.append(condition_term)
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if condition_reference := indication.find('pbs:condition-reference', ns):
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condition_id = condition_reference.get('{http://www.w3.org/1999/xlink}href').lstrip('#')
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condition = root.find('pbs:prescribing-texts-list', ns).find('pbs:condition[@xml:id="' + condition_id + '"]', ns)
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condition_term = condition.find('pbs:preferred-term', ns).text.strip()
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indication_strings.append(condition_term)
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if not indication_strings:
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# TODO: Might have a <block-container>
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indication_strings = ['Unknown indication']
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# Get operator and criteria
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operators = restriction.findall('pbs:any', ns) + restriction.findall('pbs:all', ns) + restriction.findall('pbs:one-of', ns)
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