ev-to-dicom/ev_to_dicom/auto_cine.py

51 lines
1.5 KiB
Python

# ev-to-dicom
# Copyright © 2023 Lee Yingtong Li
#
# This program is free software: you can redistribute it and/or modify
# it under the terms of the GNU Affero General Public License as published by
# the Free Software Foundation, either version 3 of the License, or
# (at your option) any later version.
#
# This program is distributed in the hope that it will be useful,
# but WITHOUT ANY WARRANTY; without even the implied warranty of
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
# GNU Affero General Public License for more details.
#
# You should have received a copy of the GNU Affero General Public License
# along with this program. If not, see <https://www.gnu.org/licenses/>.
import os
import sys
from .ev_to_dcm import ev_files_to_dcm_file
if len(sys.argv) < 2:
print('Usage: {} [output directory]'.format(sys.argv[0]))
sys.exit(0)
outdir = sys.argv[1]
if not os.path.exists(outdir):
print('Output directory does not exist')
sys.exit(1)
# Get series data
series_number = int(os.path.split(os.getcwd())[1].split('_')[0]) + 1
series_uid = os.path.split(os.getcwd())[1].split('_')[1]
study_uid = os.path.split(os.path.split(os.getcwd())[0])[1]
output_filename = '{:04d}_0000.dcm'.format(series_number - 1)
# Convert images
input_filenames = []
for filename in os.listdir('.'):
if filename.endswith('.bin'):
print(filename)
input_filenames.append(filename)
input_filenames.sort()
ev_files_to_dcm_file(study_uid, series_uid, series_number, 1, input_filenames, os.path.join(outdir, output_filename))