RunasSudo/scipy-yli
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14c4054a47
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Author SHA1 Message Date
RunasSudo
14c4054a47
Use hpstat for yli.turnbull to enable computation of confidence intervals 2023-10-20 21:12:55 +11:00
RunasSudo
675422246f
Allow passing own fig, ax to yli.kaplanmeier 2023-10-20 21:11:35 +11:00
RunasSudo
26a6766f0e
Implement TimeVaryingCox 2023-07-17 01:34:34 +10:00
RunasSudo
fd7384f810
Implement yli.Cox 2023-07-16 16:22:34 +10:00
RunasSudo
d17412ca07
Implement yli.GLM 2023-07-16 16:22:20 +10:00
RunasSudo
4b9537643a
Add maxiter, tolerance parameters to IntervalCensoredCox 2023-07-16 16:20:39 +10:00
RunasSudo
71b714ab7d
Implement HorizontalEffectPlot 2023-07-16 16:17:45 +10:00
RunasSudo
138e31751a
Add test case for Poisson regression 2023-04-22 17:08:54 +10:00
RunasSudo
3c22fe4197
Add "reduced" parameter for IntervalCensoredCox 2023-04-22 17:08:36 +10:00
RunasSudo
7746ca275e
Plotting functions for interval-censored Cox model 2023-04-22 13:39:27 +10:00
RunasSudo
a0a9900dfa
Add yli.Poisson to documentation 2023-04-22 01:19:45 +10:00
RunasSudo
3d30045832
Add unit test for yli.kaplanmeier 2023-04-22 01:18:38 +10:00
RunasSudo
aff4287ccc
Add unit test for yli.turnbull 2023-04-22 01:18:38 +10:00
RunasSudo
ae1a4cb5b8
Do not attempt to draw legend on survival curves if only one curve 2023-04-22 01:18:38 +10:00
RunasSudo
8238383edb
Fix up yli.turnbull 
Draw step function at configurable point on each Turnbull interval (previous documentation did not correctly describe the behaviour of the function)
Draw survival curve from time 0, survival 100%
 2023-04-22 01:18:38 +10:00
RunasSudo
8899d1c968
Implement RegressionModel.pseudo_rsquared_adj 2023-04-21 18:11:04 +10:00
RunasSudo
53a0e98227
Pass through interval-censored Cox fitting progress to stderr 2023-04-21 18:10:40 +10:00
RunasSudo
fd30a3c1c7
Refactor extraction of raw terms from regression result 2023-04-21 18:10:19 +10:00
RunasSudo
f9a8a5cf01
Implement more kwargs in yli.regress 2023-04-21 18:09:58 +10:00
RunasSudo
aa88239cb1
Implement deviance chi-squared test for Poisson regression 2023-04-21 15:27:47 +10:00
RunasSudo
503519c9c0
Implement Poisson regression 2023-04-21 15:27:18 +10:00
RunasSudo
844e6bdec9
Implement ttest_ind_multiple 2023-04-20 15:41:03 +10:00
RunasSudo
2852d3dd19
Implement yli.IntervalCensoredCox 2023-04-17 22:40:32 +10:00
RunasSudo
65f3a2601d
Update unit tests 2023-04-17 15:16:09 +10:00
RunasSudo
847ec85083
Draw survival curves beginning at time 0 2023-04-17 13:24:01 +10:00
RunasSudo
f1e943ca89
Update documentation 2023-04-17 13:24:01 +10:00
RunasSudo
ac2aca7b8f
Large refactor of yli.regress 2023-04-16 23:49:43 +10:00
RunasSudo
dbfcec56c3
Implement yli.cox_interval_censored 2023-03-05 02:11:12 +11:00
RunasSudo
e12dd65fdc
Implement yli.turnbull 2023-03-04 21:52:31 +11:00
RunasSudo
d359820f42
Add documentation for survival analysis 2023-02-26 00:05:10 +11:00
RunasSudo
18727cd950
Add documentation for SHAP 2023-02-25 23:59:01 +11:00
RunasSudo
88509c71a3
Implement yli.logrank 2023-02-25 17:26:31 +11:00
RunasSudo
e83aa88b19
Implement yli.kaplanmeier 2023-02-25 17:15:22 +11:00
RunasSudo
642d0d4e4f
Implement likelihood ratio test for Cox regression 2023-02-25 15:08:09 +11:00
RunasSudo
eb0d520d95
Add support for statsmodels PHReg to yli.regress 2023-02-25 14:46:13 +11:00
RunasSudo
fa95f6d75c
Add exposure kwarg to yli.regress, for Poisson etc. 2023-02-25 14:12:44 +11:00
RunasSudo
17bf3cbcab
Add helper function set up graph fonts 2023-02-07 18:50:15 +11:00
RunasSudo
967b853b02
Implement utilities for SHAP values in regression 2023-02-07 18:50:07 +11:00
RunasSudo
dbebc3b8e9
Autodetect ordinal variables in auto_univariable 2023-02-07 18:49:57 +11:00
RunasSudo
68d7a31b53
Add documentation for auto_correlations 2023-02-07 18:49:00 +11:00
RunasSudo
c2d4aaf8be
Implement yli.auto_correlations 2022-12-03 22:23:29 +11:00
RunasSudo
5dce873e55
Add helper function for making dtype ordinal (ordered category) 2022-12-03 22:23:18 +11:00
RunasSudo
0fa261498a
In auto_descriptives, autodetect ordinal variables based on category dtype 2022-12-03 22:20:42 +11:00
RunasSudo
5633a191f1
Update documentation 2022-12-03 20:01:05 +11:00
RunasSudo
fa89f2f156
Implement yli.spearman 2022-12-03 20:00:52 +11:00
RunasSudo
56e16bc71d
Fixups and update documentation 2022-12-03 02:02:34 +11:00
RunasSudo
bbb998003e
Show inherited members for chi-squared based tests 2022-12-03 01:59:54 +11:00
RunasSudo
957ef9f3fc
Add documentation for RegressionResult.brant 2022-12-03 01:59:54 +11:00
RunasSudo
b2a72a8ef8
Add unit test for RegressionResult.brant 2022-12-03 01:59:54 +11:00
RunasSudo
ea2d04ada1
Add unit test for OrdinalLogit 2022-12-03 01:59:54 +11:00