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scipy-yli
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119 Commits

Author SHA1 Message Date
RunasSudo a0a9900dfa
Add yli.Poisson to documentation 2023-04-22 01:19:45 +10:00
RunasSudo 3d30045832
Add unit test for yli.kaplanmeier 2023-04-22 01:18:38 +10:00
RunasSudo aff4287ccc
Add unit test for yli.turnbull 2023-04-22 01:18:38 +10:00
RunasSudo ae1a4cb5b8
Do not attempt to draw legend on survival curves if only one curve 2023-04-22 01:18:38 +10:00
RunasSudo 8238383edb
Fix up yli.turnbull 
Draw step function at configurable point on each Turnbull interval (previous documentation did not correctly describe the behaviour of the function)
Draw survival curve from time 0, survival 100%
 2023-04-22 01:18:38 +10:00
RunasSudo 8899d1c968
Implement RegressionModel.pseudo_rsquared_adj 2023-04-21 18:11:04 +10:00
RunasSudo 53a0e98227
Pass through interval-censored Cox fitting progress to stderr 2023-04-21 18:10:40 +10:00
RunasSudo fd30a3c1c7
Refactor extraction of raw terms from regression result 2023-04-21 18:10:19 +10:00
RunasSudo f9a8a5cf01
Implement more kwargs in yli.regress 2023-04-21 18:09:58 +10:00
RunasSudo aa88239cb1
Implement deviance chi-squared test for Poisson regression 2023-04-21 15:27:47 +10:00
RunasSudo 503519c9c0
Implement Poisson regression 2023-04-21 15:27:18 +10:00
RunasSudo 844e6bdec9
Implement ttest_ind_multiple 2023-04-20 15:41:03 +10:00
RunasSudo 2852d3dd19
Implement yli.IntervalCensoredCox 2023-04-17 22:40:32 +10:00
RunasSudo 65f3a2601d
Update unit tests 2023-04-17 15:16:09 +10:00
RunasSudo 847ec85083
Draw survival curves beginning at time 0 2023-04-17 13:24:01 +10:00
RunasSudo f1e943ca89
Update documentation 2023-04-17 13:24:01 +10:00
RunasSudo ac2aca7b8f
Large refactor of yli.regress 2023-04-16 23:49:43 +10:00
RunasSudo dbfcec56c3
Implement yli.cox_interval_censored 2023-03-05 02:11:12 +11:00
RunasSudo e12dd65fdc
Implement yli.turnbull 2023-03-04 21:52:31 +11:00
RunasSudo d359820f42
Add documentation for survival analysis 2023-02-26 00:05:10 +11:00
RunasSudo 18727cd950
Add documentation for SHAP 2023-02-25 23:59:01 +11:00
RunasSudo 88509c71a3
Implement yli.logrank 2023-02-25 17:26:31 +11:00
RunasSudo e83aa88b19
Implement yli.kaplanmeier 2023-02-25 17:15:22 +11:00
RunasSudo 642d0d4e4f
Implement likelihood ratio test for Cox regression 2023-02-25 15:08:09 +11:00
RunasSudo eb0d520d95
Add support for statsmodels PHReg to yli.regress 2023-02-25 14:46:13 +11:00
RunasSudo fa95f6d75c
Add exposure kwarg to yli.regress, for Poisson etc. 2023-02-25 14:12:44 +11:00
RunasSudo 17bf3cbcab
Add helper function set up graph fonts 2023-02-07 18:50:15 +11:00
RunasSudo 967b853b02
Implement utilities for SHAP values in regression 2023-02-07 18:50:07 +11:00
RunasSudo dbebc3b8e9
Autodetect ordinal variables in auto_univariable 2023-02-07 18:49:57 +11:00
RunasSudo 68d7a31b53
Add documentation for auto_correlations 2023-02-07 18:49:00 +11:00
RunasSudo c2d4aaf8be
Implement yli.auto_correlations 2022-12-03 22:23:29 +11:00
RunasSudo 5dce873e55
Add helper function for making dtype ordinal (ordered category) 2022-12-03 22:23:18 +11:00
RunasSudo 0fa261498a
In auto_descriptives, autodetect ordinal variables based on category dtype 2022-12-03 22:20:42 +11:00
RunasSudo 5633a191f1
Update documentation 2022-12-03 20:01:05 +11:00
RunasSudo fa89f2f156
Implement yli.spearman 2022-12-03 20:00:52 +11:00
RunasSudo 56e16bc71d
Fixups and update documentation 2022-12-03 02:02:34 +11:00
RunasSudo bbb998003e
Show inherited members for chi-squared based tests 2022-12-03 01:59:54 +11:00
RunasSudo 957ef9f3fc
Add documentation for RegressionResult.brant 2022-12-03 01:59:54 +11:00
RunasSudo b2a72a8ef8
Add unit test for RegressionResult.brant 2022-12-03 01:59:54 +11:00
RunasSudo ea2d04ada1
Add unit test for OrdinalLogit 2022-12-03 01:59:54 +11:00
RunasSudo 2135796d85
Automatically factorise pandas categorical when required for regression 2022-12-02 21:42:41 +11:00
RunasSudo 04643d312c
Add unit test for RegressionResult.bootstrap 2022-12-02 21:07:08 +11:00
RunasSudo e4e85db354
Refactor bootstrap regression API as method of RegressionResult 2022-12-02 21:04:58 +11:00
RunasSudo 4d59e1a521
Refactor Brant test API as method of RegressionResult 2022-12-02 20:47:35 +11:00
RunasSudo fc8303678f
Initial implementation of Brant test 2022-12-02 20:47:34 +11:00
RunasSudo 0dab62ad0a
Implement yli.OrdinalLogit as preferred model for ordinal logistic regression 
OrdinalLogit uses a parameterisation where the cutoff terms are directly incorporated
 2022-12-02 20:47:11 +11:00
RunasSudo f8e56d96b1
Add "method" parameter for yli.regress 2022-12-02 12:54:03 +11:00
RunasSudo a48e96e96c
Handle OrderedModel for yli.regress 2022-12-02 12:53:50 +11:00
RunasSudo 5b08784498
Ignore ModuleNotFoundError in yli.reload 2022-11-29 23:08:31 +11:00
RunasSudo 645cb7a85e
Rename bootstrap_regress to regress_bootstrap and update 
Improve performance by directly calling statsmodels regression
Report bootstrap in model summary
Add to documentation
 2022-11-29 23:00:14 +11:00