8e30c41cc4
Do not compute standard errors in yli.turnbull if CIs are not required
2023-12-31 18:34:30 +11:00
035b1592dc
Update yli.turnbull for the case where no data are right-censored
2023-12-31 18:34:19 +11:00
00ed38d47d
Fix error in survtime_to_numeric when applied to 1D data
2023-12-31 18:33:44 +11:00
f2987bfd2d
Bring yli.turnbull up to date with hpstat 82f4a54
2023-12-31 18:08:19 +11:00
a48c59f780
Update yli.turnbull for hpstat 2880fe8
2023-11-01 19:39:51 +11:00
263f65f478
Pass further options to hpstat in yli.turnbull
2023-10-20 21:32:28 +11:00
14c4054a47
Use hpstat for yli.turnbull to enable computation of confidence intervals
2023-10-20 21:12:55 +11:00
675422246f
Allow passing own fig, ax to yli.kaplanmeier
2023-10-20 21:11:35 +11:00
26a6766f0e
Implement TimeVaryingCox
2023-07-17 01:34:34 +10:00
fd7384f810
Implement yli.Cox
2023-07-16 16:22:34 +10:00
d17412ca07
Implement yli.GLM
2023-07-16 16:22:20 +10:00
4b9537643a
Add maxiter, tolerance parameters to IntervalCensoredCox
2023-07-16 16:20:39 +10:00
71b714ab7d
Implement HorizontalEffectPlot
2023-07-16 16:17:45 +10:00
138e31751a
Add test case for Poisson regression
2023-04-22 17:08:54 +10:00
3c22fe4197
Add "reduced" parameter for IntervalCensoredCox
2023-04-22 17:08:36 +10:00
7746ca275e
Plotting functions for interval-censored Cox model
2023-04-22 13:39:27 +10:00
3d30045832
Add unit test for yli.kaplanmeier
2023-04-22 01:18:38 +10:00
ae1a4cb5b8
Do not attempt to draw legend on survival curves if only one curve
2023-04-22 01:18:38 +10:00
8238383edb
Fix up yli.turnbull
...
Draw step function at configurable point on each Turnbull interval (previous documentation did not correctly describe the behaviour of the function)
Draw survival curve from time 0, survival 100%
2023-04-22 01:18:38 +10:00
8899d1c968
Implement RegressionModel.pseudo_rsquared_adj
2023-04-21 18:11:04 +10:00
53a0e98227
Pass through interval-censored Cox fitting progress to stderr
2023-04-21 18:10:40 +10:00
fd30a3c1c7
Refactor extraction of raw terms from regression result
2023-04-21 18:10:19 +10:00
f9a8a5cf01
Implement more kwargs in yli.regress
2023-04-21 18:09:58 +10:00
aa88239cb1
Implement deviance chi-squared test for Poisson regression
2023-04-21 15:27:47 +10:00
503519c9c0
Implement Poisson regression
2023-04-21 15:27:18 +10:00
844e6bdec9
Implement ttest_ind_multiple
2023-04-20 15:41:03 +10:00
2852d3dd19
Implement yli.IntervalCensoredCox
2023-04-17 22:40:32 +10:00
847ec85083
Draw survival curves beginning at time 0
2023-04-17 13:24:01 +10:00
f1e943ca89
Update documentation
2023-04-17 13:24:01 +10:00
ac2aca7b8f
Large refactor of yli.regress
2023-04-16 23:49:43 +10:00
dbfcec56c3
Implement yli.cox_interval_censored
2023-03-05 02:11:12 +11:00
e12dd65fdc
Implement yli.turnbull
2023-03-04 21:52:31 +11:00
d359820f42
Add documentation for survival analysis
2023-02-26 00:05:10 +11:00
18727cd950
Add documentation for SHAP
2023-02-25 23:59:01 +11:00
88509c71a3
Implement yli.logrank
2023-02-25 17:26:31 +11:00
e83aa88b19
Implement yli.kaplanmeier
2023-02-25 17:15:22 +11:00
642d0d4e4f
Implement likelihood ratio test for Cox regression
2023-02-25 15:08:09 +11:00
eb0d520d95
Add support for statsmodels PHReg to yli.regress
2023-02-25 14:46:13 +11:00
fa95f6d75c
Add exposure kwarg to yli.regress, for Poisson etc.
2023-02-25 14:12:44 +11:00
17bf3cbcab
Add helper function set up graph fonts
2023-02-07 18:50:15 +11:00
967b853b02
Implement utilities for SHAP values in regression
2023-02-07 18:50:07 +11:00
dbebc3b8e9
Autodetect ordinal variables in auto_univariable
2023-02-07 18:49:57 +11:00
68d7a31b53
Add documentation for auto_correlations
2023-02-07 18:49:00 +11:00
c2d4aaf8be
Implement yli.auto_correlations
2022-12-03 22:23:29 +11:00
5dce873e55
Add helper function for making dtype ordinal (ordered category)
2022-12-03 22:23:18 +11:00
0fa261498a
In auto_descriptives, autodetect ordinal variables based on category dtype
2022-12-03 22:20:42 +11:00
5633a191f1
Update documentation
2022-12-03 20:01:05 +11:00
fa89f2f156
Implement yli.spearman
2022-12-03 20:00:52 +11:00
56e16bc71d
Fixups and update documentation
2022-12-03 02:02:34 +11:00
957ef9f3fc
Add documentation for RegressionResult.brant
2022-12-03 01:59:54 +11:00
